Wednesday, January 21, 2026

1) Indonesia-Australia Security Architecture Must Include Papua Considerations


2) West Papua under siege: Rising militarisation and civil society resistance

3) Unlawful military detention of three Indigenous Papuans in Agandugume District, Puncak Regency


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https://www.internationalaffairs.org.au/australianoutlook/indonesia-australia-security-architecture-must-include-papua-considerations/

21 Jan 2026 

1) Indonesia-Australia Security Architecture Must Include Papua Considerations  

By Geo Dzakwan Arshali & Alfath Aziz Kurnia


Indonesia-Australia relations are entering an unprecedented phase of formalised security cooperation, marked by a watershed Treaty on Common Security set for signing in early 2026. Regardless of how closely both governments are now deepening their cooperation, Papua remains a sensitive point for the two nations that, if left unaddressed, could undermine the durability of this emerging security architecture.

Modern Indonesia-Australia ties have oscillated between cooperation and suspicion, often hinging on questions of sovereignty. The first formal bilateral security agreement — the 1995 Agreement on Maintaining Security — was a breakthrough, committing both sides to consult on mutual security interests. But this pact collapsed in 1999 when an Australia-led UN peacekeeping force entered East Timor as it voted for independence. A decade later, both countries sought to rebuild ties through the 2006 Lombok Treaty, which explicitly reaffirmed Indonesia’s sovereignty and territorial integrity, specifically over Papua. Despite these assurances, bilateral relations came under strain again in 2013 after revelations that Australian intelligence had tapped senior Indonesian officials, including then-President Yudhoyono, before being restored through a Joint Understanding on a Code of Conduct for intelligence matters in August 2014.

The current Australia-Indonesia Treaty on Common Security, which represents a significant upgrade over earlier iterations, outlines commitments to consult each other if either is threatened, and to hold regular security dialogues at the leader and ministerial levels. It deliberately stops short of a mutual defence pact — respecting Indonesia’s non-alignment posture — but symbolically elevates the partnership to its highest level ever. Interestingly, this pact comes on the heels of Australia’s Pukpuk Treaty with Papua New Guinea (PNG) in mid-September 2025 — PNG’s first alliance and Australia’s first new defence treaty since ANZUS. This formal mutual defence arrangement underscored Canberra’s strategic focus on its northern approaches amid Beijing’s growing influence in the Pacific.

On the sidelines, however, some Indonesian elites likely see the Pukpuk Treaty as a response to Jakarta’s increasing strategic ties with China and to reports that Russia had informally sought basing access at Biak in Papua province. Though the Australian and PNG counterparts consulted Indonesia before signing, the sense of strategic signalling persists.

Fortunately, the establishment of the Indonesia-PNG-Australia Trilateral Defence Ministers’ Meeting in December 2025 offers a direct mechanism to enhance cooperation in areas of mutual interest. Complemented by the Indonesia-PNG Defence Cooperation Agreement, specifically its focus on border management, these arrangements may help further ease sensitivities among the three countries.

Australia may have no territorial claim in Papua, but instability there would directly affect its northern approaches and test Canberra’s new mutual defence commitments under the Pukpuk Treaty. And any perceived future presence of Russian or Chinese influence in Eastern Indonesia, even if framed as cooperation with Jakarta, would alter the regional balance in ways Canberra cannot afford to ignore.

Traditionally, West Papua is precisely the issue that Canberra and Jakarta avoid discussing in any institutional context. For Indonesia, Papua, comprising its restive easternmost provinces, is an internal issue of territorial integrity, non-negotiable and sensitive to the core. But for many Australians, Papua has long been viewed through a human rights and self-determination lens, even as their governments tread cautiously on the issue. Canberra’s perceived sympathy for West Papuan separatism has long irritated Indonesian policymakers. This was evident in January 2017, when “insulting” training materials at an Australian base appeared to question Indonesia’s sovereignty over Papua and demean the country’s five founding principles of Pancasila, prompting a brief but sharp downturn in their relations. This demonstrated that Papua must be part of any Indonesia-Australia security framework, because it is the issue most likely to trigger miscalculation if left unaddressed.

This risk is not hypothetical. In mid-January 2026, armed separatists of the Free Papua Movement fired shots to intimidate Freeport Indonesia workers while surrounding them at a company outpost in Central Papua, prompting a high-risk rescue operation by Indonesian security forces. The incident shows how Papua’s volatile security environment can escalate rapidly, with implications that extend to Indonesia’s eastern neighbours.

Indonesia’s approach to Papua, and what it expects from Australia, is now evolving under President Prabowo. The ex-general has made no secret of his desire to bolster Indonesia’s military might across the archipelago, notably its Eastern region. His administration, which includes hardliners, has so far continued a security-heavy approach in combating West Papuan rebellion. In August 2025, Prabowo launched six new regional military commands to strengthen its defence posture by extending territorial reach and deploying forces to key strategic areas amid global instability. One of these new commands is based in Merauke, South Papua — establishing a whole army division headquarters in a province adjacent to PNG. Alongside this, Indonesia is beefing up its air and naval presence in its eastern waters.

What Indonesia’s Prabowo might want from Australia’s Albanese regarding Papua sits alongside Australia’s own specific expectations of Indonesia vis-à-vis Papua.

Jakarta will likely demand explicit respect for Indonesia’s territorial integrity and firm reassurance of non-interference in Papuan matters in every possible aspect. At the same time, Indonesia will likely make it clear to Australia that it intends to engage with all major actors, since the treaty is partly designed to allow Prabowo to demonstrate that he can balance relations with both U.S.- and China-aligned partners.

Concurrently, Australia’s 2024 National Defence Strategy adopted a posture of “deterrence by denial” to prevent hostile power projection near its northern approaches rather than relying solely on coalition support. Prabowo’s appearances alongside non-Western leaders during the 2025 China Victory Day Parade have likely sharpened Australian concerns that Indonesia might edge closer to a China-led CRINK Axis that seeks to challenge U.S. hegemony in the global order. The priority for Canberra is hence to secure transparency regarding any foreign presence or strategic involvement, specifically from nations of the so-called Axis of Upheaval, in Indonesia’s Eastern region. Australia will expect any developments to be communicated clearly under the new treaty’s consultative framework.

As Southeast Asia’s natural leader and the Pacific’s principal security actor, Indonesia and Australia, respectively, carry a special responsibility for regional stability within an architecture of collaboration that, if successful, could anchor regional security in an era of great-power uncertainty. But this architecture must be comprehensive — and that means institutionalising trust exactly where distrust has historically run deepest.


Geo Dzakwan Arshali is undergraduate student in International Affairs Management at School of International Studies, Universiti Utara Malaysia, and Research Intern (Regional Security Architecture Programme) with Institute of Defence and Strategic Studies (IDSS) at S. Rajaratnam School of International Studies (RSIS). He is concurrently an Emerging Leaders Fellow at FACTS Asia, Cadet Researcher (Outgoing) at Asian Institute of International Affairs and Diplomacy (AIIAD), and Senior Analyst & Program Manager at World Order Lab.

Alfath Aziz Kurnia is an undergraduate student in International Affairs Management at the School of International Studies, Universiti Utara Malaysia. He is currently an undergraduate researcher at the Asian Institute of International Affairs and Diplomacy (AIIAD) and a Content Writer at World Order Lab. His research interests focus on war studies and international security, with particular attention to Southeast Asia’s relations with external powers and regional maritime security issues.

This article is published under a Creative Commons License and may be republished with attribution


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(Photos in report)
Human Rights Monitor


2) West Papua under siege: Rising militarisation and civil society resistance

The Indonesian government’s militarised approach to conflict resolution and economic development in West Papua has reached alarming levels, triggering widespread internall displacementhuman rights violations, and growing civil society resistance. According to a December 2025 report by the Indonesian Legal Aid Foundation (YLBHI), entitled “Papua in the Grip of Military Operations,” the region has become the site of Indonesia’s longest-running military operations, which have been taking place in the Papuan provinces since 1961.
People across West Papua have gone to the streets to voice their rejection of the growing military presence and expanding role of the military, ranging from economic development to education and health services in conflict-affected areas. Ongoing raids against the West Papua National Liberation Army (TPNPB) have frequently been accompanied by human rights violations, including enforced disappearancesextra-judicial killings, and torture. Civil society groups, church leaders, and human rights organisations are united in calling for an immediate halt to military operations, demilitarisation, and meaningful engagement in a peaceful dialogue.

Scale of militarisation in West Papua

Between 2024 and early 2025, YLBHI recorded the deployment of approximately 29 non-organic army units to West Papua, including five new battalions added in October 2024, with each unit averaging around 450 soldiers. The government’s plan to establish 100 territorial battalionsdemonstrates the military’s expanding role as both a security actor and development implementer. In Intan Jaya Regency alone, dozens of military posts were established in September 2025, as troops took control of villages. The local indigenous population and human rights observers are concerned that the extensive military presence in Intan Jaya serves the purpose of securing the gold-rich Wabu Block mining concession covering approximately 1.18 million hectares.
The YLBHI report documents at least 36 victims of extrajudicial killings between 2023 and 2025, with the death toll reaching 151 people from 2018 to 2024. Almost none of these cases have been legally processed or brought before a Human Rights Court. The majority of displaced persons are women, children, and the elderly, facing severely limited access to education, healthcare, and food. Reports indicate that military operations have been accompanied by the use of drones and helicopter gunships to drop explosives on civilian areas.
Komnas Perempuan (National Commission on Violence Against Women) has documented severe impacts on women and children, including reports of sexual violence against internally displaced females and the use of places of worship as military outposts. Commissioner Yuni Asriyanti statedthat as long as a militaristic approach continues, it will be impossible to imagine peace in West Papua, as this approach silences women’s voices, ignores their specific needs, and deepens structural violence.

Civil society protests against militarisation

In response to escalating militarisation, civil society groups across West Papua have mobilised in peaceful protest. Between late October and early November 2025, demonstrations took place in Nabire, Enarotali, Sugapa, and Jayapura, demanding an end to military operations and the withdrawal of non-organic troops. Further protests against the rising militarisation in West Papua occurred in the regencies Intan Jaya and Yahukimo in January 2026.

Protests in Sugapa, Intan Jaya

On 13 January 2026, the Intan Jaya Student and People’s Movement (GPMR-I) organised a peaceful demonstration in Sugapa, the capital of Intan Jaya Regency, with an estimated 500 to 1,000 participants. Protesters gathered at multiple points before marching to the Intan Jaya Regent’s Office. The action was a direct response to the heavy military presence, military emergency, and the humanitarian crisis since armed conflict significantly intensified in Intan Jaya in 2019. Ongoing military operations have a severe impact on civilian life, particularly for indigenous Papuans. They live in constant fear of military operations and armed clashes in the immediate vicinity of their homes.
The GPMR-I presented comprehensive data on the humanitarian impact of militarisation. According to the data üpresented, approximately 23 non-organic military posts have been constructed in Intan Jaya Regency, resulting in the total paralysis of 52 out of 59 educational facilities. Six health facilities, including hospitals and health centres, have ceased functioning. The movement documented 62 civilians killed by Indonesian military personnel without legal process, while more than 60,000 people have fled Intan Jaya and Puncak Jaya Regencies to safer areas such as Timika and Nabire, unable to return to their homes.
Upon arriving at the Regent’s Office at 11:45 am., protesters were informed that the Regent Aner Maiseni had departed for Nabire. After waiting until 2:30 pm for a response from Deputy Regent Elias Igapa and the regent’s staff, the coordinators announced that demands would not be submitted without the regent present. The protesters demanded immediate action on the stagnation of education, health services, IDP return, and the ongoing security crisis.

Protest against militarisation in Sugapa on 13 January 2026

Protests in Dekai, Yahukimo

On 21 January 2026, the Yahukimo Student Front of Indonesia organised a protest in Dekai, the capital of Yahukimo Regency, in response to massive military deployments that occurred between 9 and 29 December 2025. According to organisers, approximately 600 Indonesian military personnel were deployed by sea via the Braza River, with additional airdrops continuing through late December, including the deployment of a new Brimob (Police Mobile Brigade Corps) unit. The protest was also attended by school children, a possible reason why security forces refrained from dispersing the protest violently.
The Yahukimo Student Front’s statement documented a pattern of human rights violations dating back to 2021, including shootings and arbitrary arrests of civilians, as well as incidents involving drone attacks and the alleged use of booby traps or anti-personnel land mines. As of August 2025, approximately 1,890 people in Yahukimo had been forced to flee their homes, with IDPs facing severe health crises due to limited medical access.
The protesters issued 25 demands, including the immediate withdrawal of military forces, cessation of aerial bombing, release of political prisoners, and the granting of the right to self-determination as a democratic solution. They also called for the revocation of permits for 28 military posts operated by the Cartenz Peace Unit in Yahukimo, as well as unconditional access for the United Nations, foreign journalists, and humanitarian agencies in Intan Jaya.

Protest against militarisation in Dekai on 21 January 2026

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Human Rights Monitor

3) Unlawful military detention of three Indigenous Papuans in Agandugume District, Puncak Regency

On 16 January 2026, Mr Kataw Kulua, 27, Mr Yaikunus Murib, 26, and Mr Lois Murib, 29, were arbitrarily arrested by personnel of the Indonesian National Armed Forces (TNI) near the BNPB Logistics Warehouse, Agandugume District, Puncak Regency, Central Papua Province. The three men were unarmed, not in possession of firearms, ammunition, or any illegal items, yet were accused by the military of being members of the West Papua National Liberation Army (TPNPB). As of 18 January 2026, they remain under military custody without access to judicial oversight.
According to information documented by a local human rights defender, the three indigenous Papuans were detained during a military patrol at approximately 10:30 am while they were heading home after buying things at a store. Following their arrest, they were taken to the Rajawali II Military Post and subsequently to the Yonif 142/KJ Post for questioning.
The military personnel reportedly failed to provide an arrest warrant or an explanation of legal grounds. Following the interrogation, the three detainees were not handed over to the police as required under Indonesian law. Despite the absence of evidence linking Mr Kataw Kulua, Mr Yaikunus Murib, and Mr Lois Murib to armed activity, the military personnel kept them in detention as of 18 January 2026. Updated information on the arrest is currently being verified.  

Human rights and legal analysis

The arrest and continued military detention of the three Papuan men constitute arbitrary arrest and detention, in violation of Article 9 of the International Covenant on Civil and Political Rights (ICCPR), which guarantees the right to liberty and security of person and prohibits deprivation of liberty without lawful grounds and due process.
The TNI has no mandate to conduct law enforcement functions against civilians, including arrest, interrogation, or detention. Under Indonesian law, such powers rest exclusively with the Indonesian National Police (Polri). The continued military detention of the victims without charge, judicial review, or access to legal counsel further violates Article 28D(1) of the Indonesian Constitution and Articles 17 and 18 of the Indonesian Criminal Procedure Code (KUHAP).
The presumption of guilt based solely on alleged affiliation with an armed group, without evidence, reflects a pattern of collective punishment and criminalisation of indigenous Papuan civilians in the Papuan provinces. Unlawful military detention without civilian oversight exposes the detainees to a risk of being subjected to torture and enforced disappearance.
Detailed Case Data
Location: Agandugume, Puncak Regency, Central Papua, Indonesia (-3.9025963, 137.9185611) 
Region: Indonesia, Central Papua, Puncak, Agandugume
Total number of victims: 3
#Number of VictimsName, DetailsGenderAgeGroup AffiliationViolations
1.Kataw Kulua
male27 Indigenous Peoplesarbitrary detention
2.Yaikunus Murib
male26 Indigenous Peoplesarbitrary detention
3.Lois Murib
male29 Indigenous Peoplesarbitrary detention
Period of incident: 16/01/2026 – 16/01/2026
Perpetrator: , Indonesian Army (TNI-AD)
Perpetrator details: Yonif 142/KJ members
Issues: indigenous peoples

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